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GLpApp Namespace Reference


Classes

class  GLpApp::AdvDiffReactOptModel
 PDE-constrained inverse problem based on a 2D discretization of a diffusion/reaction system. More...
class  GLpApp::AdvDiffReactOptModelCreator
 A utility class for creating an AdvDiffReactOptModelCreator/tt> object by reading from the command-line. More...
class  GLpApp::GLpYUEpetraDataPool
class  GLpApp::Usr_Par

Functions

ostream & operator<< (ostream &, const Usr_Par &)
bool CrsMatrix2MATLAB (const Epetra_CrsMatrix &, ostream &)
bool Vector2MATLAB (const Epetra_Vector &, ostream &)
bool FEVector2MATLAB (const Epetra_FEVector &, ostream &)
int quadrature (const int, const int, Epetra_SerialDenseMatrix &, Epetra_SerialDenseVector &)
int meshreader (const Epetra_Comm &, Epetra_IntSerialDenseVector &, Epetra_SerialDenseMatrix &, Epetra_IntSerialDenseVector &, Epetra_SerialDenseMatrix &, Epetra_IntSerialDenseMatrix &, Epetra_IntSerialDenseMatrix &, const char geomFileBase[], const bool trace=true, const bool dumpAll=false)
int lassembly (const Epetra_SerialDenseMatrix &, const Epetra_SerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_SerialDenseVector &, const Epetra_SerialDenseVector &, const Usr_Par &, Epetra_SerialDenseMatrix &, Epetra_SerialDenseVector &)
int assemblyFECrs (const Epetra_Comm &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseMatrix &, const Epetra_IntSerialDenseMatrix &, Teuchos::RefCountPtr< Epetra_FECrsMatrix > &, Teuchos::RefCountPtr< Epetra_FEVector > &)
int assemblyFECrs (const Epetra_Comm &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseMatrix &, const Epetra_IntSerialDenseMatrix &, Teuchos::RefCountPtr< Epetra_FECrsMatrix > &, Teuchos::RefCountPtr< Epetra_FEVector > &, bool)
int assemble (const Epetra_Comm &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseMatrix &, const Epetra_IntSerialDenseMatrix &, Teuchos::RefCountPtr< Epetra_FECrsMatrix > &, Teuchos::RefCountPtr< Epetra_FECrsMatrix > &, Teuchos::RefCountPtr< Epetra_FEVector > &)
int assemble_bdry (const Epetra_Comm &Comm, const Epetra_IntSerialDenseVector &ipindx, const Epetra_SerialDenseMatrix &ipcoords, const Epetra_IntSerialDenseVector &pindx, const Epetra_SerialDenseMatrix &pcoords, const Epetra_IntSerialDenseMatrix &t, const Epetra_IntSerialDenseMatrix &e, Teuchos::RefCountPtr< Epetra_FECrsMatrix > *B, Teuchos::RefCountPtr< Epetra_FECrsMatrix > *R)
int nonlinvec (const Epetra_Comm &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseMatrix &, const Teuchos::RefCountPtr< const Epetra_MultiVector > &, Teuchos::RefCountPtr< Epetra_FEVector > &)
int nonlinjac (const Epetra_Comm &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseMatrix &, const Teuchos::RefCountPtr< const Epetra_MultiVector > &, Teuchos::RefCountPtr< Epetra_FECrsMatrix > &)
int nonlinhessvec (const Epetra_Comm &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseMatrix &, const Teuchos::RefCountPtr< const Epetra_MultiVector > &, const Teuchos::RefCountPtr< const Epetra_MultiVector > &, const Teuchos::RefCountPtr< const Epetra_MultiVector > &, Teuchos::RefCountPtr< Epetra_FEVector > &)
int compproduct (Epetra_SerialDenseVector &, double *, double *)
int compproduct (Epetra_SerialDenseVector &, double *, double *, double *)
double determinant (const Epetra_SerialDenseMatrix &)
int inverse (const Epetra_SerialDenseMatrix &, Epetra_SerialDenseMatrix &)
void gpfctn (const Epetra_SerialDenseVector &v, Epetra_SerialDenseVector &gv)
void g2pfctn (const Epetra_SerialDenseVector &, Epetra_SerialDenseVector &)
void gfctn (const Epetra_SerialDenseVector &, Epetra_SerialDenseVector &)
void rect2DMeshGenerator (const int numProc, const int procRank, const double len_x, const double len_y, const int local_nx, const int local_ny, const int bndy_marker, Epetra_IntSerialDenseVector *ipindx_out, Epetra_SerialDenseMatrix *ipcoords_out, Epetra_IntSerialDenseVector *pindx_out, Epetra_SerialDenseMatrix *pcoords_out, Epetra_IntSerialDenseMatrix *t_out, Epetra_IntSerialDenseMatrix *e_out, std::ostream *out, const bool dumpAll)
 Generate a simple rectangular 2D triangular mesh that is only partitioned between processors in the y direction.

Variables

const double GLp_pi = 3.14159265358979323846

Function Documentation

ostream & GLpApp::operator<< (  ostream &  ,
const Usr_Par & 
) 
 

Definition at line 768 of file GLpApp_GLpYUEpetraDataPool.cpp.

bool GLpApp::CrsMatrix2MATLAB (  const Epetra_CrsMatrix &  ,
ostream & 
) 
 

Definition at line 2079 of file GLpApp_GLpYUEpetraDataPool.cpp.

bool GLpApp::Vector2MATLAB (  const Epetra_Vector &  ,
ostream & 
) 
 

Definition at line 2181 of file GLpApp_GLpYUEpetraDataPool.cpp.

bool GLpApp::FEVector2MATLAB (  const Epetra_FEVector &  ,
ostream & 
) 
 

Definition at line 2249 of file GLpApp_GLpYUEpetraDataPool.cpp.

int GLpApp::quadrature (  const   int,
const   int,
Epetra_SerialDenseMatrix &  ,
Epetra_SerialDenseVector & 
) 
 

int GLpApp::meshreader (  const Epetra_Comm &  ,
Epetra_IntSerialDenseVector &  ,
Epetra_SerialDenseMatrix &  ,
Epetra_IntSerialDenseVector &  ,
Epetra_SerialDenseMatrix &  ,
Epetra_IntSerialDenseMatrix &  ,
Epetra_IntSerialDenseMatrix &  ,
const char  geomFileBase[],
const bool  trace = true,
const bool  dumpAll = false
) 
 

Definition at line 1505 of file GLpApp_GLpYUEpetraDataPool.cpp.

int GLpApp::lassembly (  const Epetra_SerialDenseMatrix &  ,
const Epetra_SerialDenseVector &  ,
const Epetra_SerialDenseMatrix &  ,
const Epetra_SerialDenseVector &  ,
const Epetra_SerialDenseVector &  ,
const Usr_Par &  ,
Epetra_SerialDenseMatrix &  ,
Epetra_SerialDenseVector & 
) 
 

Definition at line 1366 of file GLpApp_GLpYUEpetraDataPool.cpp.

int assemblyFECrs (  const Epetra_Comm &  ,
const Epetra_IntSerialDenseVector &  ,
const Epetra_SerialDenseMatrix &  ,
const Epetra_IntSerialDenseVector &  ,
const Epetra_SerialDenseMatrix &  ,
const Epetra_IntSerialDenseMatrix &  ,
const Epetra_IntSerialDenseMatrix &  ,
Teuchos::RefCountPtr< Epetra_FECrsMatrix > &  ,
Teuchos::RefCountPtr< Epetra_FEVector > & 
) 
 

int assemblyFECrs (  const Epetra_Comm &  ,
const Epetra_IntSerialDenseVector &  ,
const Epetra_SerialDenseMatrix &  ,
const Epetra_IntSerialDenseVector &  ,
const Epetra_SerialDenseMatrix &  ,
const Epetra_IntSerialDenseMatrix &  ,
const Epetra_IntSerialDenseMatrix &  ,
Teuchos::RefCountPtr< Epetra_FECrsMatrix > &  ,
Teuchos::RefCountPtr< Epetra_FEVector > &  ,
bool 
) 
 

int assemble (  const Epetra_Comm &  ,
const Epetra_IntSerialDenseVector &  ,
const Epetra_SerialDenseMatrix &  ,
const Epetra_IntSerialDenseVector &  ,
const Epetra_SerialDenseMatrix &  ,
const Epetra_IntSerialDenseMatrix &  ,
const Epetra_IntSerialDenseMatrix &  ,
Teuchos::RefCountPtr< Epetra_FECrsMatrix > &  ,
Teuchos::RefCountPtr< Epetra_FECrsMatrix > &  ,
Teuchos::RefCountPtr< Epetra_FEVector > & 
) 
 

int GLpApp::assemble_bdry (  const Epetra_Comm &  Comm,
const Epetra_IntSerialDenseVector &  ipindx,
const Epetra_SerialDenseMatrix &  ipcoords,
const Epetra_IntSerialDenseVector &  pindx,
const Epetra_SerialDenseMatrix &  pcoords,
const Epetra_IntSerialDenseMatrix &  t,
const Epetra_IntSerialDenseMatrix &  e,
Teuchos::RefCountPtr< Epetra_FECrsMatrix > *  B,
Teuchos::RefCountPtr< Epetra_FECrsMatrix > *  R
) 
 

Definition at line 842 of file GLpApp_GLpYUEpetraDataPool.cpp.

int GLpApp::nonlinvec (  const Epetra_Comm &  ,
const Epetra_IntSerialDenseVector &  ,
const Epetra_SerialDenseMatrix &  ,
const Epetra_IntSerialDenseVector &  ,
const Epetra_SerialDenseMatrix &  ,
const Epetra_IntSerialDenseMatrix &  ,
const Teuchos::RefCountPtr< const Epetra_MultiVector > &  ,
Teuchos::RefCountPtr< Epetra_FEVector > & 
) 
 

Definition at line 1942 of file GLpApp_GLpYUEpetraDataPool.cpp.

int GLpApp::nonlinjac (  const Epetra_Comm &  ,
const Epetra_IntSerialDenseVector &  ,
const Epetra_SerialDenseMatrix &  ,
const Epetra_IntSerialDenseVector &  ,
const Epetra_SerialDenseMatrix &  ,
const Epetra_IntSerialDenseMatrix &  ,
const Teuchos::RefCountPtr< const Epetra_MultiVector > &  ,
Teuchos::RefCountPtr< Epetra_FECrsMatrix > & 
) 
 

Definition at line 1792 of file GLpApp_GLpYUEpetraDataPool.cpp.

int GLpApp::nonlinhessvec (  const Epetra_Comm &  ,
const Epetra_IntSerialDenseVector &  ,
const Epetra_SerialDenseMatrix &  ,
const Epetra_IntSerialDenseVector &  ,
const Epetra_SerialDenseMatrix &  ,
const Epetra_IntSerialDenseMatrix &  ,
const Teuchos::RefCountPtr< const Epetra_MultiVector > &  ,
const Teuchos::RefCountPtr< const Epetra_MultiVector > &  ,
const Teuchos::RefCountPtr< const Epetra_MultiVector > &  ,
Teuchos::RefCountPtr< Epetra_FEVector > & 
) 
 

Definition at line 1628 of file GLpApp_GLpYUEpetraDataPool.cpp.

int GLpApp::compproduct (  Epetra_SerialDenseVector &  ,
double *  ,
double * 
) 
 

Definition at line 780 of file GLpApp_GLpYUEpetraDataPool.cpp.

int GLpApp::compproduct (  Epetra_SerialDenseVector &  ,
double *  ,
double *  ,
double * 
) 
 

Definition at line 789 of file GLpApp_GLpYUEpetraDataPool.cpp.

double GLpApp::determinant (  const Epetra_SerialDenseMatrix &   ) 
 

Definition at line 1476 of file GLpApp_GLpYUEpetraDataPool.cpp.

int GLpApp::inverse (  const Epetra_SerialDenseMatrix &  ,
Epetra_SerialDenseMatrix & 
) 
 

Definition at line 1452 of file GLpApp_GLpYUEpetraDataPool.cpp.

void GLpApp::gpfctn (  const Epetra_SerialDenseVector &  v,
Epetra_SerialDenseVector &  gv
) 
 

Definition at line 1904 of file GLpApp_GLpYUEpetraDataPool.cpp.

void GLpApp::g2pfctn (  const Epetra_SerialDenseVector &  ,
Epetra_SerialDenseVector & 
) 
 

Definition at line 1754 of file GLpApp_GLpYUEpetraDataPool.cpp.

void GLpApp::gfctn (  const Epetra_SerialDenseVector &  ,
Epetra_SerialDenseVector & 
) 
 

Definition at line 2052 of file GLpApp_GLpYUEpetraDataPool.cpp.

void GLpApp::rect2DMeshGenerator (  const int  numProc,
const int  procRank,
const double  len_x,
const double  len_y,
const int  local_nx,
const int  local_ny,
const int  bndy_marker,
Epetra_IntSerialDenseVector *  ipindx_out,
Epetra_SerialDenseMatrix *  ipcoords_out,
Epetra_IntSerialDenseVector *  pindx_out,
Epetra_SerialDenseMatrix *  pcoords_out,
Epetra_IntSerialDenseMatrix *  t_out,
Epetra_IntSerialDenseMatrix *  e_out,
std::ostream *  out,
const bool  dumpAll
) 
 

Generate a simple rectangular 2D triangular mesh that is only partitioned between processors in the y direction.

ToDo: Finish documentation!

Definition at line 8 of file rect2DMeshGenerator.cpp.

Variable Documentation

const double GLpApp::GLp_pi = 3.14159265358979323846
 

Definition at line 46 of file GLpApp_GLpYUEpetraDataPool.cpp.

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